Step 2: A table containing the results will be displayed. Sketch the substructure you are interested in. Step 1: Click on the molecule editor button inside the search tab. PDB files that have been viewed previously can be loaded using File/ Recent PDBĤ.2.1.1 How to Search the Protein Databank by Chemical Substructure NOTE: If you have a PDB structure already saved you can read it into ICM by going to the File Menu and selecting Open. Double click on a row to load the PDB file.A table containing the results will be displayed.Click on the search tab and enter a search string or PDB code.
To Search the PDB and Download a Structure: To view the PDB file in 3D in the graphical display double click on a row in the PDBSearchResults table. Once a search is complete a table of PDB files relating to your search query will be displayed. More advanced PDB search tools and how to use the PDB search result table are described in the section entititled Searching the Different fields can be searched by using the drop down arrow as shown below. An asterisk (*) wildcard can be used to list all the pdb files currently available in the protein databank. You can use keyword searching or type in the PDB code you are interested in.
The PDB search tab provides easy access to the PDB database. How to Search the Protein Databank and Download Search the Crystallography Open Database Ĭlick on the search tab and then use the drop down menu to identify the database you would like to search and download from.BLAST search the NCBI sequence database.The Protein Databank - search for protein and chemical.The Search tab allows you to search and download content from the following databases: 4.2 How to search and download Protein Structure, Sequences, and ChemicalsĪvailable in the following product(s): ICM-Browser | ICM-Browser-Pro | ICM-Pro | ICM-Chemist
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